CARTA Glossary
Word | Definition | Related Vocabulary |
---|---|---|
Nervous system |
The network of nerve cells and fibers that transmits nerve impulses between parts of the body. |
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Novel (disease) |
A new strain of a disease that has not been previously identified in a species. |
de Novo, Species |
Nucleic acid |
One of the four classes of major biomolecules. The overall name for DNA and RNA, which are composed of nucleotides. DNA is double-stranded and more stable while RNA is single-stranded and less stable. |
Deoxyribonucleic acid (DNA), Nucleotide, Ribonucleic acid (RNA) |
Nucleotide |
Molecular building blocks for DNA and RNA Specifically, they consist of three components: a 5-carbon sugar, a phosphate group, and a nitrogenous base. The type of sugar, either deoxyribose or ribose, determines if the resulting nucleic acid is DNA or RNA. |
Deoxyribonucleic acid (DNA), Nucleic acid, Ribonucleic acid (RNA) |
Pandemic |
An epidemic that has spread across regions, including multiple continents or worldwide. |
Epidemic |
Parasite |
An organism that lives on or in a host organism at the expense of the host. |
Host |
Parasitism |
A close relationship between two organisms where one benefits at the expense of the other. |
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Pathogen |
A bacterium, virus, or other microorganism that can cause disease. |
Bacteria, Virus |
Pathogenesis |
The biological mechanism (or mechanisms) that leads to a disease state and can also refer to the origin and development of a disease, and whether it is acute, chronic, or recurrent. |
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Pathogenicity |
The absolute ability of an infectious agent to cause disease or damage in a host. |
Host, Infectious (disease) |
Peer Review (Academic Publishing) |
The professional critique by other scholars or scientists from the same field that normally takes place before scholarly or scientific papers are accepted for publication. |
|
Phenotype |
Observable traits of an organism that result from interactions between genes and environment during development. |
Gene |
Phylogenetic Tree |
A branching diagram showing the evolutionary relationships among biological species, or other entities, based on their physical or genetic characteristics. |
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Plasmodium |
A genus of single-celled organisms that are obligate parasites of vertebrates and insects. In humans, malaria is caused by multiple species of Plasmodium and transmitted by mosquitos (commonly female Anopheles mosquitos). |
Anopheles Mosquitos, Genus, Malaria, Parasite |
Polygenic |
Relating to a trait determined by two or more genes. Most traits of organisms are polygenic. |
Gene |
Polymerase chain reaction (PCR) |
A method of copying a specified locus. |
|
Preprint (Academic Publishing) |
A version of a scholarly or scientific paper that has not yet been formally peer reviewed. It is freely available before it is published as a finished product in a peer-reviewed scholarly or scientific journal, which often include costly paywalls. It is generally not good practice for news outlets to report on preprinted results because they have not been peer-reviewed. |
Peer Review (Academic Publishing) |
Prokaryotes |
Unicellular organisms that lack a membrane-bound nucleus, mitochondria, or any other membrane-bound organelle. This definition is now debated as some “prokaryotes,” such as archea (“extremophiles”), are more closely related to eukaryotes. |
Eukaryotes |
Protein |
One of the four classes of major biomolecules. Proteins are molecules encoded by DNA sequences and composed of amino acids connected by peptide bonds. These range in size from a few amino acids (short peptides) to large molecules (long polypeptides) comprised of thousands of amino acids. |
Amino acids, DNA sequence, Molecule |
Protozoa |
An informal term for unicellular (single celled) eukaryotes, either free-living or parasitic. |
Eukaryotes |
Pulmonary Hypertension |
High blood pressure in the blood vessels that supply the lungs. Also affects the right side of the heart. |
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Receptor |
A molecule on the surface of host cells used by pathogens for attachment and/or invasion. Examples: angiotensin-converting-enzyme 2 (ACE2) used by SARS- CoV- 2; Sialic acid used by influenza A. |
Influenza, Pathogen, Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), Sialic acids |
Reproductive Tract (Human Female) |
The external (labia, clitoris, and vaginal opening) and internal (clitoris, uterus, fallopian tubes, and ovaries) sex organs that function in reproduction. |
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Reservoir (Medicine) |
A population that is chronically infested with the causative agent of a disease and can act as a source of further infection. |
Infection |
Respiratory |
Associated with the act of respiration or breathing. |
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Ribonucleic acid (RNA) |
A molecule essential in gene coding, decoding, regulation, and expression. RNA consists of sequences of the four nucleotide bases: Adenine, Uracil, Guanine, and Cytosine. Types of RNA include messenger RNA (mRNA), transfer RNA (tRNA), ribosomal RNA (rRNA), small nuclear RNA (snRNA), and other non-coding RNAs. Some viruses including Influenza A and SARS-CoV-2 have RNA genomes. |
Gene, Genome, Influenza, Molecule, Nucleotide, Sequence, Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), Virus |
RNA virus |
A virus that has RNA (ribonucleic acid) as its genetic material. This nucleic acid is usually single-stranded RNA (ssRNA) but may be double-stranded RNA (dsRNA). |
Nucleic acid, Ribonucleic acid (RNA), Virus |
Salmonella |
A genus of rod-shaped Gram-negative bacteria of the family Enterobacteriaceae and is divided by serovar type as either “non-typhoidal” Salmonella or “typhoidal” Salmonella. Salmonella enter the body through ingestion, often through consumption of contaminated meat, eggs, milk, or other foods that have come into contact with animal fecal matter. Its niche is in the intestines. |
Genus, Gram-Negative and Gram-Positive Staining, Serovar, “Non-typhoidal” Salmonella, “Typhoidal” Salmonella |
Salmonella enterica |
A bacterium species of the genus Salmonella. Most cases of salmonellosis in humans is caused by S. enterica, often via infected cattle or poultry, including eggs. S. enterica can be divided in six subspecies and comprise over 2,000 serovars. |
Bacteria, Genus, Salmonellosis, Serovar, Species |
Salmonella enterica typhi |
A serovar of Salmonella enterica whose reservoir is the human body. It is usually contracted by ingestion of food or water that is contaminated by the feces of those carrying the organism. |
Reservoir (Medicine), Salmonella enterica, Serovar |
Salmonellosis |
An intestinal infection caused by Salmonella bacteria. Common symptoms include diarrhea, fever, abdominal cramps, and vomiting. |
Salmonella |
Serovar |
A subdivision within a species bacteria or viruses, or among immune cells of different individuals grouped together based on cell surface antigens. |
Antigen, Bacteria, Virus |
Severe Acute Respiratory Syndrome (SARS) |
A contagious and sometimes fatal respiratory illness caused by the severe acute respiratory syndrome coronavirus (SARS-CoV or SARS-CoV-1). SARS was first reported in China in November 2002 and was rapidly spread worldwide by international travelers. Symptoms first appear flu-like with a fever, chills, muscle aches, headache and sometimes diarrhea. This can progress to a dry cough and shortness of breath. A massive global response helped to contain the spread of the disease and no new cases of the original SARS have been reported since 2004. |
Severe acute respiratory syndrome coronavirus 1 (SARS-CoV or SARS-CoV-1) |
Severe acute respiratory syndrome coronavirus 1 (SARS-CoV or SARS-CoV-1) |
A strain of coronavirus that causes severe acute respiratory syndrome (SARS). It is a single-stranded RNA virus that infects the epithelial cells within the lungs and can infect humans, bats, and palm civets. |
Coronavirus, Epithelial cells, RNA virus, Severe Acute Respiratory Syndrome (SARS) |
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) |
A novel strain of coronavirus closely related to SARS-CoV that causes coronavirus disease 2019 (COVID-19), which resulted in a pandemic. It is a naturally evolving virus that crossed to humans from another animal, mostly likely a bat. SARS CoV-2 is completely different from the family that includes influenza viruses though both can cause respiratory symptoms. |
Coronavirus, Coronavirus disease 2019 (COVID-19), Influenza, Novel (disease), Pandemic, Respiratory, Severe acute respiratory syndrome coronavirus 1 (SARS-CoV or SARS-CoV-1), Virus |
Sialic acids |
Family of acidic sugars with a nine-carbon backbone. They are found at the outermost fringes of the sugar chains (glycans) that cover all vertebrate cells. The two most common sialic acids in mammals are N-acetylneuraminic acid (Neu5Ac) and N-glycolylneuraminic acid (Neu5Gc). |
Glycans, N-acetylneuraminic acid (Neu5Ac), N-glycolylneuraminic acid (Neu5Gc) |
Sialidase |
An enzyme that cleaves sialic acid, an abundant sugar that coats most vertebrate cells. |
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Sickle Cell Anemia |
An inherited red blood cell (RBC) disorder and one of the group of disorders of Sickle Cell Disease. In Sickle Cell Anemia, RBCs assume a sickle, or crescent shape, and degrade prematurely, causing a lack of red blood cells (anemia) to perform gas exchange. Shortness of breath, fatigue, and delayed growth and development in children are common conditions. |
Erythrocytes (red blood cells - RBCs), Sickle Cell Disease |
Sickle Cell Disease |
A group of inherited red blood cell disorders caused by the production of hemoglobin S, a protein in red blood cells (RBCs) that causes RBCs to assume a sickle, or crescent, shape. Sickled red blood cells break down prematurely, which causes the group of disorders, including Sickle Cell Anemia (a lack of red blood cells causing shortness of breath, fatigue, and delayed growth and development in children), jaundice (yellowing of the eyes and skin due to rapid breakdown of red blood cells), clotting (sickled red blood cells, which are stiff and inflexible, get stuck in small blood vessels depriving tissues and organs of oxygen-rich blood and can lead to organ damage, especially in the lungs, kidneys, spleen, and brain), and pulmonary hypertension (high blood pressure in the blood vessels that supply the lungs). Repeated infections, and periodic episodes of pain are also common. The severity of symptoms varies from person to person. |
Clotting (blood), Hemoglobin S, Infection, Jaundice, Protein, Pulmonary Hypertension, Erythrocytes (red blood cells - RBCs), Sickle Cell Anemia |
Sickle Cell Trait |
In humans, a condition in which a person is heterozygous for codominant alleles of the hemoglobin subunit beta (HBB) gene and produces both normal hemoglobin proteins (hgb) and abnormal hemoglobin proteins (hemoglobin S, which causes red blood cells (RBCs) to assume a sickle, or crescent, shape). In environments where malaria is endemic, humans with Sickle Cell Trait have a selective advantage as it confers some resistance to malaria. Sickle cells prevent the malaria parasite from stealing actin (a protein that maintains the pliable internal skeleton of RBCs). Actin is used by the parasite to transport another protein, adhesin (produced by the parasite), to the cell surface. Adhesin causes the infected red blood cells to adhere to each other and to vessel walls, resulting in microvascular inflammation. A person with Sickle Cell Trait does not display the severe symptoms of Sickle Cell Disease. |
Actin, Allele, Endemic, Gene, Hemoglobin, Hemoglobin S, Hemoglobin Subunit Beta Gene (HBB), Inflammation, Malaria, Parasite, Protein, Erythrocytes (red blood cells - RBCs), Sickle Cell Disease |
Single Nucleotide Polymorphism (SNP) |
A variation involving a single base-pair, occurring in at least 1% of the population. |
Mutation, Nucleotide, Variation (Biology) |
Species |
A population whose individuals can mate with one another to produce viable and fertile offspring. This is a debated definition and the concept is problematic for extinct fossil organisms for which DNA is not available. This definition is problematic in regard to bacteria as they can exchange genetic material across widely separate taxa. |
Bacteria, Deoxyribonucleic acid (DNA) |
Spillover Infection |
Also known as “pathogen spillover” and “spillover event,” occurs when a reservoir population with a high pathogen prevalence comes into contact with a novel host population. The pathogen is transmitted from the reservoir population and may or may not be transmitted within the host population. |
Host, Novel (disease), Pathogen, Reservoir (Medicine) |
Streptococcal Infection |
Any type of infection caused by the group of Streptococcus bacteria. |
Bacteria, Streptococcus |
Streptococcus |
A genus of Gram-positive bacteria with over 50 recognized species. Streptococcus species are responsible for “strep” throat, pink eye, meningitis, bacterial pneumonia, endocarditis, erysipelas, and necrotizing fasciitis (the “flesh- eating” bacterial infections). However, many streptococcal species are not pathogenic and form part of the commensal human microbiota of the mouth, skin, intestine, and upper respiratory tract. Streptococci are also a necessary ingredient in producing Emmentaler (“Swiss”) cheese. |
Bacteria, Genus, Gram-Negative and Gram-Positive Staining, Meningitis, Microbiome, Pathogenicity, Species |
Symbionts |
An organism that lives in a symbiosis providing benefits to its host. |
Symbiosis |
Symbiosis |
A close and long-term biological interaction between two different biological organisms, be it mutualistic, commensalistic, or parasitic. |
Parasitism |
Togavirus (Togaviridae) |
The viral family comprising two genera, Alphavirus and Rubivirus. All togaviruses that are either animal pathogens or zoonoses belong to the Alphavirus genus. Humans can contract togaviruses via vectored transmission from domestic livestock. |
Alphavirus, Genus, Vector (Epidemiology) |
Transmissible (Disease) |
Illnesses that are transmitted from one host to another though direct or indirect contact, via a vector or contaminated food and water. Synonymous with communicable and infectious. |
Communicable (disease), Host, Infectious (disease), Vector (Epidemiology) |
Typhoid fever |
A bacterial infection affecting only humans caused by Salmonella typhi. Symptoms include a gradual onset of a high fever, which is commonly accompanied by weakness, abdominal pain, constipation, headaches, and mild vomiting. Typhoid is spread by eating or drinking food or water contaminated with the feces of an infected person. |
Salmonella enterica typhi |
Vaccine |
A biological preparation containing an agent that resembles a disease-causing microorganism, often a weakened or killed form of the microbe, its toxins, or one of its surface glycoproteins combined with an adjuvant (such as alum, an aluminum salt) which contributes to the immune response. Vaccines act by stimulating the body’s immune system to recognize the agent as a threat, to destroy it, and to recognize it in the future, providing an acquired immunity to that infectious disease. (Synonym: immunization). |
Adjuvant, Glycoprotein, Immune system, Infectious (disease) |
Vaginal Microbiome |
The totality of all organisms (microbes) that colonize the vagina. |
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Vector (Epidemiology) |
Any agent which carries and transmits an infectious pathogen to another living organism. Most agents that act as vectors are living organisms. |
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Viral (Biology) |
Of or relating to viruses. (see Virus) |
Virus |
Virulence |
The degree of damage caused by a pathogen or microbe to its host. |
Host, Pathogen |
Virus |
A submicroscopic infectious agent 10 million times smaller than a human that relies on a living host cell for metabolic processes and replication. Like living organisms, viruses possess genes and evolve by natural selection. Unlike living organisms, viruses lack cellular structure, do not have their own metabolism, instead relying on a living host cell for production of materials, and replication through self-assembly inside a host cell. |
Gene, Host, Infectious (disease) |
West Nile Fever |
An infection by the West Nile virus, which is typically spread by mosquitoes. Symptoms include fever, headache, vomiting, or a rash. In rare cases, encephalitis (swelling of the brain) or meningitis occurs, with associated neck stiffness, confusion, or seizures. |
Infection, Meningitis, West Nile Virus (WNV) |
West Nile Virus (WNV) |
A RNA virus that causes West Nile Fever and is a from the genus Flavivirus, which also contains the Zika Virus, Dengue Virus, and Yellow Fever Virus. WNV is primarily transmitted by mosquitoes with birds as the primary hosts. |
Dengue Virus, Genus, Host, RNA virus, West Nile Fever, Yellow Fever Virus, Zika Virus |
White blood cells (WBCs) |
A type of immune cell involved in protecting the body against infectious disease and foreign invaders. WBCs are also called leukocytes. |
Immune system, Infectious (disease) |
Y-chromosome |
One of the two allosomes of the mammalian genome that determine sex. The Y-chromosome can only be inherited paternally. |
Allosomes, Chromosome, Deoxyribonucleic acid (DNA), Genome |
Yellow Fever |
A viral disease caused by Yellow Fever Virus and spread by female Aedes mosquitos. Typically, short in duration, symptoms include fever, chills, loss of appetite, nausea, muscle pains particularly in the back, and headaches. In some cases, a relapse of Yellow Fever will occur, causing abdominal pain and liver damage that results in yellow skin (see Jaundice). |
Aedes Mosquitos, Jaundice, Yellow Fever Virus |
Yellow Fever Virus |
An RNA virus of the genus Flavivirus that causes Yellow fever and is spread by the bite of an infected female mosquito, primarily by female Aedes mosquitos. Origin: Africa. |
Aedes Mosquitos, Genus, RNA virus, Yellow Fever |
Zika Fever (Zika Virus Disease; Zika) |
An infectious disease caused by the Zika virus. Symptoms resemble Dengue Fever and may include fever, red eyes, joint pain, headache, and a maculopapular rash but are typically mild. While Zika Fever is mainly spread via mosquitos, it can also be sexually transmitted and potentially spread by blood transfusions. Infections in pregnant women can spread to the baby which may cause microcephaly and other brain malformations. Infections in adults have been linked to Guillain–Barré Syndrome (GBS). |
Dengue Fever, Guillain–Barré Syndrome (GBS), Infectious (disease), Zika Virus |
Zika Virus |
An RNA virus of the genus Flavivirus that causes Zika Fever and is spread by Aedes mosquitos. It was first identified in 1947 in the Zika Forest of Uganda, from which it was named. Zika virus is related to the Dengue, Yellow Fever, Japanese Encephalitis, and West Nile Viruses. Traditionally, Zika virus occurred within a narrow equatorial belt from Africa to Asia but spread to the Americas causing the 2015–2016 Zika virus epidemic. Origin: Africa. |
Aedes Mosquitos, Dengue Virus, Epidemic, Genus, Japanese Encephalitis Virus (JEV), RNA virus, West Nile Virus (WNV), Yellow Fever Virus, Zika Fever (Zika Virus Disease; Zika) |
Zoonosis |
A disease which can be transmitted to humans from animals. |
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“Non-typhoidal” Salmonella |
A serovar of Salmonella and the causative pathogen of salmonellosis. “Non-typhoidal” Salmonella can be transferred from animals to humans and humans to humans. |
Salmonella, Salmonellosis, Serovar |
“Typhoidal” Salmonella |
A serovar of Salmonella and the causative pathogen of Typhoid Fever. |
Salmonella, Serovar, Typhoid fever |